WP-hpc-tools/sge/find-run-hosts.sh

#!/bin/bash
#
# 20160713
# Wirawan Purwanto

shopt -s extglob

function find_run_hosts()
# Find where a job runs.
{
  local optJobNumber="$1"
  qstat -f | _Find_run_hosts
}

function _Find_run_hosts()
# Processing part of the routine above.
# Takes qstat -f output.
{
  awk \
    -v optPrintRaw="$optPrintRaw" \
    -v optJobNumber="$optJobNumber" \
    '####
BEGIN {
  STDERR = "/dev/stderr"
}

# Valid host status field
($0 ~ /^[A-Za-z]/) && (NF == 5 || NF == 6) {
  host_info = $0
  queue_node = $1
  core_usage_combo = $3
  states = $6  # if any
  next
}

$1 == optJobNumber {
  print host_info
  print $0
}' # end awk script
}


function find_job_owner()
# Arg: <jobnumber>
{
  qstat -j "$1" \
    | awk '$1 == "owner:" { print $2; exit }'
}


function find_job_master_node()
# Arg: <jobnumber>
# Finds the "master" node of the job, i.e. where the batch job script
# was first initially launched.
# Unfortunately qstat -j doesn't return the desired info, we have to
# utilize full qstat to get this info.
{
  qstat  \
    | awk -v optJobNumber="$1"  '
$1 == optJobNumber {
  queueHost = $8
  sub(/^.*@/, "", queueHost)
  print queueHost 
  exit
}' # end awk script
}


function list_job_nodes()
# Arg: <jobnumber>
{
  find_run_hosts "$1" \
    | awk '
($0 ~ /^[A-Za-z]/) && (NF == 5 || NF == 6) { 
  host = $1
  sub(/^.*@/, "", host)
  print host
}' # end awk script
}

function dump_process_tree1()
# Arg: <host> <user>
{
  local HOST="$1" JOB_OWNER="$2"
  ssh "$HOST" ps ux --forest -u "$JOB_OWNER" \
    | awk -v JobOwner="$JOB_OWNER" '($1 == "USER") || ($1 == JobOwner) { print }'
  # Note: some workaround was needed because it also printed other users
  # notably the one running this job.
}


function dump_process_trees()
{
  local SGE_JOB_ID="$1"
  local MASTER_HOST ALL_HOSTS HOST
  local JOB_OWNER
  echo "job_number: $SGE_JOB_ID"
  MASTER_HOST=$(find_job_master_node "$SGE_JOB_ID")
  JOB_OWNER=$(find_job_owner "$SGE_JOB_ID")
  ALL_HOSTS=( $(list_job_nodes "$SGE_JOB_ID") )
  echo "master_host: $MASTER_HOST"
  dump_process_tree1 "$MASTER_HOST" "$JOB_OWNER"

  for HOST in "${ALL_HOSTS[@]}"; do
    if [ "$HOST" = "$MASTER_HOST" ]; then continue; fi
    echo "host: $HOST"
    dump_process_tree1 "$HOST" "$JOB_OWNER"
  done
}


# Main program switchboard

case "$1" in
(+([0-9]))
  SGE_JOB_ID="$1"
  find_run_hosts "$SGE_JOB_ID"
  ;;
(--process*|process*|proc|procs|px)
  # Prints where the head node of the job is (i.e. the master node of the job)
  # where the job script was first executing
  if [ -z "$2" ]; then
    echo "Job ID required as arg 2" >&2
    exit 2
  fi
  SGE_JOB_ID="$2"
  dump_process_trees "$SGE_JOB_ID"
  ;;
(--head-node|--head|head|headnode|head-node|--master-node|--master|master|masternode|master-node)
  # Prints where the head node of the job is (i.e. the master node of the job)
  # where the job script was first executing
  if [ -z "$2" ]; then
    echo "Job ID required as arg 2" >&2
    exit 2
  fi
  SGE_JOB_ID="$2"
  find_job_master_node "$SGE_JOB_ID"
  ;;
(--list-node*|--list|list|listnode*|list-node*|node|nodes)
  # Lists all the compute nodes being used by this job
  if [ -z "$2" ]; then
    echo "Job ID required as arg 2" >&2
    exit 2
  fi
  SGE_JOB_ID="$2"
  list_job_nodes "$SGE_JOB_ID"
  ;;
(*)
  echo "Unknown action: $1" >&2
  exit 2
  ;;
esac

#SGE_JOB_ID="$1"
#find_run_hosts "$SGE_JOB_ID"
#find_job_owner "$SGE_JOB_ID"
#find_job_head_node "$SGE_JOB_ID"