WP-hpc-tools/sge/dump-cluster-info.py

#!/usr/bin/env python
#
# 20160826
# Wirawan Purwanto
#
# A tool that dumps every possibly imaginable info I want to get from
# a SGE-managed cluster.

import os
import re
import subprocess
import sys


def pipe_out(args, split=False, shell=False):
  """Executes a shell command, piping out the stdout to python for parsing.
  This is my customary shortcut for backtick operator.
  The result is either a single string (if split==False) or a list of strings
  with EOLs removed (if split==True)."""
  retval = subprocess.Popen(args, stdout=subprocess.PIPE, shell=shell).communicate()[0]
  if not split:
    return retval
  else:
    return retval.splitlines()


class pipe_in(object):
  """Executes a shell command, piping in the stdin from python for driving.
  This is the reverse of pipe_out.
  Commands are given through file-like write() or writelines() methods."""
  def __init__(self, args, shell=False):
    self.px = subprocess.Popen(args, stdin=subprocess.PIPE, shell=shell)
    self.args = args
  def write(self, line):
    self.px.stdin.write(line)
  def writelines(self, lines):
    for line in lines:
      self.write(line)
  def flush(self):
    self.px.stdin.flush()
  def close(self):
    self.px.stdin.close()


def errchk(cmd, args, retcode):
  """Checking for error after the invocation of an external command."""
  if retcode == 0: return

  print >>sys.stderr, "Error executing ", cmd, " ".join(args)
  if retcode < 0:
    err = "Command %s was terminated by signal %d" % (cmd, -retcode)
  else:
    err = "Command %s returned %d" % (cmd, retcode)
  raise RuntimeError, err


class sh(object):
  @staticmethod
  def run(prg, args):
    retcode = subprocess.call((prg,) + tuple(args))
    errchk(prg, args, retcode)
    return 0


_g = globals()
_g.setdefault("NODE_LIST", [])
#_g.setdefault("NODE_BAD_LIST", set())
_g.setdefault("NODE_BAD_LIST", [])
_g.setdefault("NODE_GOOD_LIST", [])
_g.setdefault("ROOT_DIR", "cluster-info")


def get_node_list():
  """Reads node list from SGE configuration."""
  node_list = pipe_out(("qconf", "-sel"), split=True)
  return node_list


def node_list():
  global NODE_LIST
  if not NODE_LIST:
    NODE_LIST = get_node_list()
  
  return NODE_LIST


def rhost_pipe_out(host, cmdline, split=False):
  cmdline_full = ["ssh", "-o", "PreferredAuthentications=publickey", host] \
               + (list(cmdline) if not isinstance(cmdline, basestring) else cmdline.split())
  rslt = pipe_out(cmdline_full, split=split)
  return rslt

 
def rhost_run(host, cmdline):
  cmdline_full = ["ssh", "-o", "PreferredAuthentications=publickey", host] \
               + (list(cmdline) if not isinstance(cmdline, basestring) else cmdline.split())
  rslt = sh.run(cmdline_full[0], cmdline_full[1:])
  return rslt
 

def rhosts_pipe_out(cmdline, filename, hosts=None, rootdir=None):
  """Executes cmdline on each remote host (the list is given in and 
  """
  global ROOT_DIR
  from os.path import dirname, join, isdir
  path_join = join
  Verb = 100
  if hosts is None:
    hosts = node_list()
  if rootdir is None:
    rootdir = ROOT_DIR
  for H in hosts:
    host_base = H.split(".")[0]
    outfname = path_join(rootdir, host_base, filename)
    outdir = dirname(outfname)
    if not isdir(outdir): 
      os.makedirs(outdir)
    if Verb >= 1:
      print(" exec: %s  %s" % (H, cmdline))
    out = rhost_pipe_out(H, cmdline, split=False)
    with open(outfname, "w") as F:
      F.write(out)


def test_accessible_hosts(hosts=None):
  """Tests ssh connectivity for all the hosts and return a two-tuple
  containing lists of good and inaccessible hosts, respectively."""
  from os.path import dirname, join, isdir
  path_join = join
  Verb = 100
  if hosts is None:
    hosts = node_list()
  good_hosts = []
  bad_hosts = []
  for H in hosts:
    host_base = H.split(".")[0]
    msg_send = "Success login from host " + host_base
    msg_recv = rhost_pipe_out(H, ("echo", msg_send))
    if msg_send == msg_recv.rstrip():
      good_hosts.append(H)
    else:
      bad_hosts.append(H)
  return good_hosts, bad_hosts


def cpuinfo_extract_processor_names(fn, ht=False):
  # REFS:
  # https://access.redhat.com/discussions/480953
  """Extracts the names of processors from /proc/cpuinfo.
  Returns it as a list of processor names.

  WARNING: Hyperthreading is detected with a lame methodology,
  and only half of the number of cores are reported (i.e. only
  physical cores)"""
  A = []
  siblings_on_socket = None
  cores_on_socket = None
  with open(fn, "r") as F:
    for L in F:
      if L.startswith("model name"):
        modelname = L.split(":", 1)[1].strip()
        A.append(modelname)
      elif L.startswith("siblings"):
        siblings_on_socket = int(L.split(":", 1)[1].strip())
      elif L.startswith("cpu cores"):
        cores_on_socket = int(L.split(":", 1)[1].strip())

  #print "siblings: ", siblings_on_socket
  #print "cores: ", cores_on_socket

  # FIXME: Quick-and-dirty solution for hyperthreading;
  # see Red Hat site above; not 100% reliable if there are several
  # kinds of CPU models, which I don't think I'll ever encountered.
  if (not ht) \
     and siblings_on_socket is not None \
     and cores_on_socket is not None \
     and siblings_on_socket != cores_on_socket:
    assert cores_on_socket*2 == siblings_on_socket
    # ^^otherwise it's not Hyperthreading, the code has to be fixed!

    A = A[0:len(A)/2] ### HACK!!!
    print("Warning: hyperthreading detected in %s" % fn)

  return A


def agg_count_names(namelist):
  """Aggregates the names in namelist to names->count mapping, as a dict.
  Useful, e.g. for counting number of unique elements in a list.
  """
  A = {}
  for C in namelist:
    try:
      A[C] = A[C] + 1
    except KeyError:
      A[C] = 1
  return A


# Below are the main gather tools

def gather_cpuinfo(hosts=None):
  """Gather tool: for cpuinfo"""
  rhosts_pipe_out(("cat", "/proc/cpuinfo"), "cpuinfo.txt", hosts=hosts)

def gather_lscpu(hosts=None):
  """Gather tool: for lscpu"""
  rhosts_pipe_out(("lscpu"), "lscpu.txt", hosts=hosts)

def gather_lspci(hosts=None):
  """Gather tool: for lspci"""
  rhosts_pipe_out(("lspci"), "lspci.txt", hosts=hosts)

def gather_free(hosts=None):
  """Gather tool: for free"""
  rhosts_pipe_out(("free"), "free.txt", hosts=hosts)

def gather_uname_a(hosts=None):
  """Gather tool: for free"""
  rhosts_pipe_out(("uname", "-a"), "uname-a.txt", hosts=hosts)


#def dict_str_sorted(d):
#  return "{" + ", ".

def summarize_cpu(hosts=None):
  from pprint import pformat
  global ROOT_DIR
  hosts_base = [ H.split(".")[0] for H in hosts ]
  getfile = lambda H, bn: os.path.join(ROOT_DIR, H, bn)
  cpu_info = []

  px_hosts_by_type = {}

  for H in hosts_base:
    px_names = cpuinfo_extract_processor_names(getfile(H, "cpuinfo.txt"))
    px_group = agg_count_names(px_names)
    #print("%s : %s" % (H, px_group))

    px_group_key = pformat(px_group)  # use pretty representation

    try:
      px_hosts_by_type[px_group_key]["hosts"] += [ H ]
    except KeyError:
      px_hosts_by_type[px_group_key] = {
        "cpu_count": px_group,
        "hosts": [ H ]
      }

  return px_hosts_by_type


def print_summarize_cpu(summary):
  host_types = sorted(summary.keys())
  nproc_grand_total = 0
  nnode_grand_total = 0
  for T in host_types:
    rec = summary[T]
    nproc_per_node = sum(rec["cpu_count"].values())
    print("%s:: %d hosts, %d procs/node, total %d procs" \
          % (T,
             len(rec["hosts"]),
             nproc_per_node,
             len(rec["hosts"]) * nproc_per_node,
            ))
    print("")
    print("    " + " ".join(sorted(rec["hosts"])))
    print("")
    nproc_grand_total += len(rec["hosts"]) * nproc_per_node
    nnode_grand_total += len(rec["hosts"])

  print("Grand total %d procs" % nproc_grand_total)
  print("Grand total %d nodes" % nnode_grand_total)


def tally_summarize_cpu(summary):
  """Tallies up the total number of processors
  """


def analyze_cpu_composition():
  summ = summarize_cpu(NODE_GOOD_LIST)
  print_summarize_cpu(summ)


def Gather_all():
  """Master gathering routine, to gather everything all at once.
  It will take some time to gather every bit of information.
  """
  global NODE_GOOD_LIST, NODE_BAD_LIST, NODE_LIST
  print("Testing node accesibility...")
  NODE_GOOD_LIST, NODE_BAD_LIST = test_accesible_hosts()

  print("\nGathering cpuinfo...")
  gather_cpuinfo(NODE_GOOD_LIST)

  print("\nGathering lscpu...")
  gather_lscpu(NODE_GOOD_LIST)

  print("\nGathering lspci...")
  gather_lspci(NODE_GOOD_LIST)

  print("\nGathering free mem...")
  gather_free(NODE_GOOD_LIST)

  print("\nGathering uname...")
  gather_uname_a(NODE_GOOD_LIST)