Quick-and-dirty knowledge base for ODU RCS.
You can not select more than 25 topics Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.

1.1 KiB

Lessons and Tutorials for Containers in HPC (and Cloud)

"Containers on HPC and Cloud with Singularity" https://pawseysc.github.io/singularity-containers/ https://github.com/pawseySC/singularity-containers

  1. Introduction to containers
  2. Basics of Singularity
  3. Share files with the host: BLAST, a bioinformatics demo
  4. Build and share your own container image
  5. Inside a build definition file
  6. Building images with Docker
  7. GUI enabled web applications: RStudio in a container
  8. Making Python not awful with containers
  9. Computational Fluid Dynamics with MPI containers
  10. Set up writable containers: another bio example with Trinity
  11. Molecular dynamics with GPU containers
  12. Reproducible scientific workflows
  13. GUI applications using X11 windows: the Gnuplot example
  14. Streamline the user experience: bash wrappers and modules
  15. Setup Singularity on your machine
  16. Overview of Docker
  17. Run multi-component web services with Docker Compose
  18. Other notable container tools