{ "cells": [ { "cell_type": "markdown", "metadata": {}, "source": [ "# Examine & fix jupyter / ipython start file\n", "\n", "Date: 2020-06-09\n", "\n", "Purpose: Try to examine the outcome of *my* fix to `~/.ipython/profile_default/startup/000-odurc-lmod.py` + the handmade \"module\" command (mine: `lmod_python_fix1.py`).\n", "\n", "Test-3: restarted the entire Jupyter stuff.\n" ] }, { "cell_type": "code", "execution_count": 3, "metadata": {}, "outputs": [], "source": [ "import sys,os" ] }, { "cell_type": "code", "execution_count": 2, "metadata": {}, "outputs": [ { "data": { "text/plain": [ "['/home/wpurwant/Testbeds/jupyter/wahab_jupyter_start',\n", " '/shared/apps/common/lmod/scripts/init',\n", " '',\n", " '/shared/apps/auto/py-jupyter/1.1.4-gcc-7.3.0-cxdz/lib/python3.7/site-packages',\n", " '/shared/apps/auto/py-numpy/1.16.3-gcc-7.3.0-mdow/lib/python3.7/site-packages',\n", " '/shared/apps/auto/py-six/1.12.0-gcc-7.3.0-ay7a/lib/python3.7/site-packages',\n", " '/shared/apps/auto/py-jinja2/2.10-gcc-7.3.0-usre/lib/python3.7/site-packages',\n", " '/shared/apps/auto/py-babel/2.6.0-gcc-7.3.0-be4y/lib/python3.7/site-packages',\n", " '/shared/apps/auto/py-pytz/2018.4-gcc-7.3.0-wqdr/lib/python3.7/site-packages',\n", " '/shared/apps/auto/py-markupsafe/1.0-gcc-7.3.0-biyo/lib/python3.7/site-packages',\n", " '/shared/apps/common/python/3.7.3-wqal/lib/python37.zip',\n", " '/shared/apps/common/python/3.7.3-wqal/lib/python3.7',\n", " '/shared/apps/common/python/3.7.3-wqal/lib/python3.7/lib-dynload',\n", " '/home/wpurwant/.local/lib/python3.7/site-packages',\n", " '/shared/apps/common/python/3.7.3-wqal/lib/python3.7/site-packages',\n", " '/shared/apps/auto/py-jupyter/1.1.4-gcc-7.3.0-cxdz/lib/python3.7/site-packages/IPython/extensions',\n", " '/home/wpurwant/.ipython',\n", " '/home/wpurwant/Testbeds/jupyter/wahab_jupyter_start',\n", " '/shared/apps/common/lmod/current/init']" ] }, "execution_count": 2, "metadata": {}, "output_type": "execute_result" } ], "source": [ "sys.path" ] }, { "cell_type": "code", "execution_count": 4, "metadata": {}, "outputs": [ { "data": { "text/plain": [ "'/shared/apps/common/lmod/scripts/init:/shared/apps/auto/py-jupyter/1.1.4-gcc-7.3.0-cxdz/lib/python3.7/site-packages:/shared/apps/auto/py-numpy/1.16.3-gcc-7.3.0-mdow/lib/python3.7/site-packages:/shared/apps/auto/py-six/1.12.0-gcc-7.3.0-ay7a/lib/python3.7/site-packages:/shared/apps/auto/py-jinja2/2.10-gcc-7.3.0-usre/lib/python3.7/site-packages:/shared/apps/auto/py-babel/2.6.0-gcc-7.3.0-be4y/lib/python3.7/site-packages:/shared/apps/auto/py-pytz/2018.4-gcc-7.3.0-wqdr/lib/python3.7/site-packages:/shared/apps/auto/py-markupsafe/1.0-gcc-7.3.0-biyo/lib/python3.7/site-packages'" ] }, "execution_count": 4, "metadata": {}, "output_type": "execute_result" } ], "source": [ "os.environ['PYTHONPATH']" ] }, { "cell_type": "code", "execution_count": 6, "metadata": {}, "outputs": [ { "data": { "text/plain": [ "" ] }, "execution_count": 6, "metadata": {}, "output_type": "execute_result" } ], "source": [ "module" ] }, { "cell_type": "code", "execution_count": 7, "metadata": {}, "outputs": [ { "data": { "text/plain": [ "'/home/wpurwant/Testbeds/jupyter/wahab_jupyter_start/lmod_python_fix3.py'" ] }, "execution_count": 7, "metadata": {}, "output_type": "execute_result" } ], "source": [ "module.__code__.co_filename" ] }, { "cell_type": "code", "execution_count": 8, "metadata": {}, "outputs": [ { "data": { "text/plain": [ "'/tmp/tmp.JtRbow9G3w'" ] }, "execution_count": 8, "metadata": {}, "output_type": "execute_result" } ], "source": [ "import os\n", "\n", "xlibpath = os.environ.get(\"LMOD_MANUAL_LD_LIBRARY_PATH\")\n", "xlibpath" ] }, { "cell_type": "code", "execution_count": 10, "metadata": {}, "outputs": [ { "data": { "text/plain": [ "['/shared/apps/common/lmod/scripts/init',\n", " '/shared/apps/auto/py-jupyter/1.1.4-gcc-7.3.0-cxdz/lib/python3.7/site-packages',\n", " '/shared/apps/auto/py-numpy/1.16.3-gcc-7.3.0-mdow/lib/python3.7/site-packages',\n", " '/shared/apps/auto/py-six/1.12.0-gcc-7.3.0-ay7a/lib/python3.7/site-packages',\n", " '/shared/apps/auto/py-jinja2/2.10-gcc-7.3.0-usre/lib/python3.7/site-packages',\n", " '/shared/apps/auto/py-babel/2.6.0-gcc-7.3.0-be4y/lib/python3.7/site-packages',\n", " '/shared/apps/auto/py-pytz/2018.4-gcc-7.3.0-wqdr/lib/python3.7/site-packages',\n", " '/shared/apps/auto/py-markupsafe/1.0-gcc-7.3.0-biyo/lib/python3.7/site-packages']" ] }, "execution_count": 10, "metadata": {}, "output_type": "execute_result" } ], "source": [ "os.environ['PYTHONPATH'].split(\":\")" ] }, { "cell_type": "code", "execution_count": 11, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "total 0\r\n" ] } ], "source": [ "ls -l $xlibpath" ] }, { "cell_type": "code", "execution_count": 12, "metadata": {}, "outputs": [ { "name": "stderr", "output_type": "stream", "text": [ "\n", "Currently Loaded Modules:\n", " 1) python/3.7.3 5) py-jinja2/2.10 9) py-jupyter/1.1.4\n", " 2) py-markupsafe/1.0 6) py-six/1.12.0 10) texlive/2020\n", " 3) py-pytz/2018.4 7) intel-mkl/2019.4.243\n", " 4) py-babel/2.6.0 8) py-numpy/1.16.3\n", "\n", " \n", "\n", "\n" ] } ], "source": [ "module(\"list\")" ] }, { "cell_type": "code", "execution_count": 13, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "total 172\r\n", "lrwxrwxrwx 1 wpurwant users 131 Jun 9 19:58 \u001b[0m\u001b[01;36mlibiomp5.so\u001b[0m -> \u001b[01;32m/shared/apps/auto/intel-mkl/2019.4.243-gcc-7.3.0-ntiu/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin/libiomp5.so\u001b[0m\u001b[K*\r\n", "lrwxrwxrwx 1 wpurwant users 134 Jun 9 19:58 \u001b[01;36mlibiomp5_db.so\u001b[0m -> \u001b[01;32m/shared/apps/auto/intel-mkl/2019.4.243-gcc-7.3.0-ntiu/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin/libiomp5_db.so\u001b[0m\u001b[K*\r\n", "lrwxrwxrwx 1 wpurwant users 136 Jun 9 19:58 \u001b[01;36mlibiompstubs5.so\u001b[0m -> 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